Package: combiroc 0.3.4

Riccardo L. Rossi

combiroc: Selection and Ranking of Omics Biomarkers Combinations Made Easy

Provides functions and a workflow to easily and powerfully calculating specificity, sensitivity and ROC curves of biomarkers combinations. Allows to rank and select multi-markers signatures as well as to find the best performing sub-signatures, now also from single-cell RNA-seq datasets. The method used was first published as a Shiny app and described in Mazzara et al. (2017) <doi:10.1038/srep45477> and further described in Bombaci & Rossi (2019) <doi:10.1007/978-1-4939-9164-8_16>, and widely expanded as a package as presented in the bioRxiv pre print Ferrari et al. <doi:10.1101/2022.01.17.476603>.

Authors:Ivan Ferrari [aut], Riccardo L. Rossi [aut, cre], Saveria Mazzara [aut], Mauro Bombaci [ccp, ctb, dtc]

combiroc_0.3.4.tar.gz
combiroc_0.3.4.zip(r-4.5)combiroc_0.3.4.zip(r-4.4)combiroc_0.3.4.zip(r-4.3)
combiroc_0.3.4.tgz(r-4.4-any)combiroc_0.3.4.tgz(r-4.3-any)
combiroc_0.3.4.tar.gz(r-4.5-noble)combiroc_0.3.4.tar.gz(r-4.4-noble)
combiroc_0.3.4.tgz(r-4.4-emscripten)combiroc_0.3.4.tgz(r-4.3-emscripten)
combiroc.pdf |combiroc.html
combiroc/json (API)
NEWS

# Install 'combiroc' in R:
install.packages('combiroc', repos = c('https://ingmbioinfo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ingmbioinfo/combiroc/issues

Datasets:

On CRAN:

3.92 score 5 stars 11 scripts 260 downloads 11 exports 41 dependencies

Last updated 5 months agofrom:ebb7c2eb38. Checks:ERROR: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesFAILOct 27 2024
R-4.5-winWARNINGSep 27 2024
R-4.5-linuxWARNINGOct 27 2024
R-4.4-winWARNINGOct 27 2024
R-4.4-macWARNINGOct 27 2024
R-4.3-winWARNINGOct 27 2024
R-4.3-macWARNINGOct 27 2024

Exports:combicombi_scorecombiroc_longcombs_withload_datamarkers_distributionranked_combsroc_reportsseurat_to_combirocshow_markerssingle_markers_statistics

Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtablegtoolsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmomentsmunsellnlmepillarpkgconfigplyrpROCpurrrR6RColorBrewerRcpprlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr